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Deterministic Pattern Mining On Genetic Sequences
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Author(s): Pedro Gabriel Ferreira (Centre for Genomic Regulation, Spain)and Paulo Jorge Azevedo (Universidade do Minho, Portugal)
Copyright: 2010
Pages: 25
Source title:
Handbook of Research on Machine Learning Applications and Trends: Algorithms, Methods, and Techniques
Source Author(s)/Editor(s): Emilio Soria Olivas (University of Valencia, Spain), José David Martín Guerrero (University of Valencia, Spain), Marcelino Martinez-Sober (University of Valencia, Spain), Jose Rafael Magdalena-Benedito (University of Valencia, Spain)and Antonio José Serrano López (University of Valencia, Spain)
DOI: 10.4018/978-1-60566-766-9.ch013
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Abstract
The recent increase in the number of complete genetic sequences freely available through specialized Internet databases presents big challenges for the research community. One such challenge is the efficient and effective search of sequence patterns, also known as motifs, among a set of related genetic sequences. Such patterns describe regions that may provide important insights about the structural and functional role of DNA and proteins. Two main classes can be considered: probabilistic patterns represent a model that simulates the sequences or part of the sequences under consideration and deterministic patterns that either match or not the input sequences. In this chapter a general overview of deterministic sequence mining over sets of genetic sequences is proposed. The authors formulate an architecture that divides the mining process workflow into a set of blocks. Each of these blocks is discussed individually.
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