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An Optimization to Protein Coding Regions Identification in Eukaryotes

An Optimization to Protein Coding Regions Identification in Eukaryotes
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Author(s): Muneer Ahmad (King Faisal University, Saudi Arabia), Azween Abdullah (University Technology PATRONAS, Malaysia)and Noor Zaman (King Faisal University, Saudi Arabia)
Copyright: 2013
Pages: 10
Source title: Bioinformatics: Concepts, Methodologies, Tools, and Applications
Source Author(s)/Editor(s): Information Resources Management Association (USA)
DOI: 10.4018/978-1-4666-3604-0.ch092

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Abstract

Significant improvement in coding regions identification was observed over many real datasets, which were obtained from the national center for bioinformatics. Quantitatively, the authors monitored a gain of 80.5% in coding identification with the Complex method, 42.5% with the Binary method, and 15% with the EIIP indicator sequence method over Mus Musculus Domesticus (House rat), NCBI Accession number: NC_006914, Length of gene: 7700 bp with number of coding regions: 4. Continuous improvement in significance with dyadic wavelet transforms will be observed as a future expectation.

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